Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s--s sugar=---- groove=w-n- planarity=0.409 type=bowl nts=4 GGGG A.DG1,B.DG13,A.DG10,B.DG18 2 glyco-bond=s--s sugar=.--- groove=w-n- planarity=0.158 type=planar nts=4 GGGG A.DG2,B.DG12,A.DG9,B.DG19 3 glyco-bond=-ss- sugar=---- groove=w-n- planarity=0.243 type=other nts=4 GGGG A.DG3,B.DG11,A.DG8,B.DG20
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.