Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Poster "DSSR-Enabled Automatic
Identification and Annotation of G-quadruplexes in the PDB"
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper,
or the NAR'15 DSSR method paper.
1 glyco-bond=---- groove=---- planarity=0.101 type=planar nts=4 gggg A.BGM2,C.BGM2,H.BGM2,D.BGM2 2 glyco-bond=---- groove=---- planarity=0.154 type=planar nts=4 GGGG A.G4,C.G4,H.G4,D.G4 3 glyco-bond=---- groove=---- planarity=0.277 type=bowl nts=4 GGGG A.G5,C.G5,H.G5,D.G5 4 glyco-bond=---- groove=---- planarity=0.088 type=planar nts=4 gggg B.BGM2,E.BGM2,F.BGM2,G.BGM2 5 glyco-bond=---- groove=---- planarity=0.153 type=planar nts=4 GGGG B.G4,E.G4,F.G4,G.G4 6 glyco-bond=---- groove=---- planarity=0.261 type=bowl nts=4 GGGG B.G5,E.G5,F.G5,G.G5
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.
1 G4 helix#1 contains 2 G4 stems: [#1,#2] [5'/5'-SEPARATED]