Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=---- sugar=---- groove=---- planarity=0.105 type=planar nts=4 GGGG A.G2,B.G2,C.G2,D.G2 2 glyco-bond=---- sugar=3333 groove=---- planarity=0.056 type=planar nts=4 GGGG A.G3,B.G3,C.G3,D.G3 3 glyco-bond=---- sugar=3333 groove=---- planarity=0.063 type=planar nts=4 GGGG A.G4,B.G4,C.G4,D.G4 4 glyco-bond=---- sugar=3333 groove=---- planarity=0.078 type=planar nts=4 GGGG A.G5,B.G5,C.G5,D.G5
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.