Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Poster "DSSR-Enabled Automatic
Identification and Annotation of G-quadruplexes in the PDB"
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper,
or the NAR'15 DSSR method paper.
1 glyco-bond=sss- groove=--wn planarity=0.171 type=other nts=4 GGGG A.DG1,B.DG19,A.DG13,A.DG9 2 glyco-bond=---s groove=--wn planarity=0.220 type=other nts=4 gGGG A.DI2,B.DG20,A.DG14,A.DG8 3 glyco-bond=---s groove=--wn planarity=0.383 type=bowl nts=4 GGGG A.DG3,B.DG21,A.DG15,A.DG7
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.