Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s-s- sugar=3333 groove=wnwn planarity=0.137 type=planar nts=4 GgGg A.DG1,A.LCG12,A.DG9,A.LCG4 2 glyco-bond=---- sugar=3-3- groove=---- planarity=0.100 type=planar nts=4 gGgG A.LCG2,B.DG23,A.LCG10,B.DG15 3 glyco-bond=---- sugar=-3-3 groove=---- planarity=0.093 type=planar nts=4 GgGg A.DG3,B.LCG14,A.DG11,B.LCG22 4 glyco-bond=s-s- sugar=3333 groove=wnwn planarity=0.151 type=planar nts=4 GgGg B.DG13,B.LCG24,B.DG21,B.LCG16
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.
1 type=V-shaped helix=#1 nts=4 GgGg A.DG1,A.LCG2,A.DG3,A.LCG4 2 type=lateral helix=#1 nts=6 gTTTTG A.LCG4,A.DT5,A.DT6,A.DT7,A.DT8,A.DG9 3 type=V-shaped helix=#1 nts=4 GgGg A.DG9,A.LCG10,A.DG11,A.LCG12 4 type=V-shaped helix=#1 nts=4 GgGg B.DG13,B.LCG14,B.DG15,B.LCG16 5 type=lateral helix=#1 nts=6 gTTTTG B.LCG16,B.DT17,B.DT18,B.DT19,B.DT20,B.DG21 6 type=V-shaped helix=#1 nts=4 GgGg B.DG21,B.LCG22,B.DG23,B.LCG24