Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=---- sugar=3333 groove=---- planarity=0.420 type=other nts=4 gggg A.LCG2,C.LCG2,D.LCG2,B.LCG2 2 glyco-bond=---- sugar=3333 groove=---- planarity=0.454 type=other nts=4 gggg A.LCG3,C.LCG3,D.LCG3,B.LCG3 3 glyco-bond=---- sugar=3333 groove=---- planarity=0.319 type=other nts=4 gggg A.LCG4,C.LCG4,D.LCG4,B.LCG4 4 glyco-bond=---- sugar=3333 groove=---- planarity=0.434 type=other nts=4 gggg E.LCG2,G.LCG2,H.LCG2,F.LCG2 5 glyco-bond=---- sugar=3333 groove=---- planarity=0.454 type=other nts=4 gggg E.LCG3,G.LCG3,H.LCG3,F.LCG3 6 glyco-bond=---- sugar=3333 groove=---- planarity=0.330 type=other nts=4 gggg E.LCG4,G.LCG4,H.LCG4,F.LCG4
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.