Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=---- sugar=.3.3 groove=---- planarity=0.395 type=other nts=4 gggg D.0G17,D.0G19,D.0G25,D.0G27 2 glyco-bond=---- sugar=-3-3 groove=---- planarity=0.324 type=other nts=4 gggg D.0G18,D.0G22,D.0G26,D.0G32 3 glyco-bond=---- sugar=-3.3 groove=---- planarity=0.333 type=other nts=4 gggg E.0G17,E.0G19,E.0G25,E.0G27 4 glyco-bond=---- sugar=-3-3 groove=---- planarity=0.311 type=other nts=4 gggg E.0G18,E.0G22,E.0G26,E.0G32
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.