Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.291 type=other nts=4 GGGG A.DG1,B.DG7,B.DG1,A.DG7 2 glyco-bond=---- sugar=---- groove=---- planarity=0.509 type=bowl-2 nts=4 GGGG A.DG8,A.DG11,B.DG8,B.DG11 3 glyco-bond=---- sugar=---- groove=---- planarity=0.625 type=bowl nts=4 GGGG A.DG9,A.DG12,B.DG9,B.DG12
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.
1 type=lateral helix=#1 nts=7 GCGGAGG A.DG1,A.DC2,A.DG3,A.DG4,A.DA5,A.DG6,A.DG7 2 type=lateral helix=#1 nts=7 GCGGAGG B.DG1,B.DC2,B.DG3,B.DG4,B.DA5,B.DG6,B.DG7