DSSR-derived G-quadruplex features in PDB entry 6tzq*
Poster "DSSR-Enabled Automatic Identification and Annotation of G-quadruplexes in the PDB" presented at the RNA2020 online meeting
Citation: before a paper dedicated to the DSSR-G4 module comes out, please cite the 2015 DSSR paper published in Nucleic Acids Research.
- X-ray (2.29 Å)
- A DNA G-quadruplex-i-motif hybrid
- Chu, B., Zhang, D., Paukstelis, P.J.: (2019) "A DNA G-quadruplex/i-motif hybrid." Nucleic Acids Res., 47, 11921-11930.
- DNA can form many structures beyond the canonical Watson-Crick double helix. It is now clear that noncanonical structures are present in genomic DNA and have biological functions. G-rich G-quadruplexes and C-rich i-motifs are the most well-characterized noncanonical DNA motifs that have been detected in vivo with either proscribed or postulated biological roles. Because of their independent sequence requirements, these structures have largely been considered distinct types of quadruplexes. Here, we describe the crystal structure of the DNA oligonucleotide, d(CCAGGCTGCAA), that self-associates to form a quadruplex structure containing two central antiparallel G-tetrads and six i-motif C-C+ base pairs. Solution studies suggest a robust structural motif capable of assembling as a tetramer of individual strands or as a dimer when composed of tandem repeats. This hybrid structure highlights the growing structural diversity of DNA and suggests that biological systems may harbor many functionally important non-duplex structures.
- G4 notes
- 2 G-tetrads, 1 G4 helix, 1 G4 stem · (2+2), UDUD
1 glyco-bond=s-s- groove=wnwn planarity=0.289 type=other nts=4 GGGG 1:A.DG4,2:B.DG5,1:B.DG4,2:A.DG5 2 glyco-bond=-s-s groove=wnwn planarity=0.289 type=other nts=4 GGGG 1:A.DG5,2:B.DG4,1:B.DG5,2:A.DG4