Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s-ss sugar=3--- groove=wn-- planarity=0.202 type=other nts=4 GGGG A.DG1001,A.DG1019,A.DG1022,A.DG1004 2 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.172 type=other nts=4 GGGG A.DG1005,A.DG1010,A.DG1018,A.DG1023 3 glyco-bond=--s- sugar=---. groove=-wn- planarity=0.182 type=other nts=4 GGGG A.DG1006,A.DG1011,A.DG1017,A.DG1024 4 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.353 type=bowl nts=4 GGGG A.DG1007,A.DG1012,A.DG1016,A.DG1025 5 glyco-bond=s-ss sugar=3--- groove=wn-- planarity=0.222 type=other nts=4 GGGG B.DG1001,B.DG1019,B.DG1022,B.DG1004 6 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.183 type=other nts=4 GGGG B.DG1005,B.DG1010,B.DG1018,B.DG1023 7 glyco-bond=--s- sugar=---3 groove=-wn- planarity=0.180 type=other nts=4 GGGG B.DG1006,B.DG1011,B.DG1017,B.DG1024 8 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.332 type=bowl nts=4 GGGG B.DG1007,B.DG1012,B.DG1016,B.DG1025 9 glyco-bond=s-ss sugar=3.-- groove=wn-- planarity=0.206 type=other nts=4 GGGG C.DG1001,C.DG1019,C.DG1022,C.DG1004 10 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.188 type=other nts=4 GGGG C.DG1005,C.DG1010,C.DG1018,C.DG1023 11 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.177 type=other nts=4 GGGG C.DG1006,C.DG1011,C.DG1017,C.DG1024 12 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.382 type=bowl nts=4 GGGG C.DG1007,C.DG1012,C.DG1016,C.DG1025 13 glyco-bond=s-ss sugar=3.-- groove=wn-- planarity=0.207 type=other nts=4 GGGG D.DG1001,D.DG1019,D.DG1022,D.DG1004 14 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.164 type=other nts=4 GGGG D.DG1005,D.DG1010,D.DG1018,D.DG1023 15 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.161 type=other nts=4 GGGG D.DG1006,D.DG1011,D.DG1017,D.DG1024 16 glyco-bond=--s- sugar=---- groove=-wn- planarity=0.342 type=bowl nts=4 GGGG D.DG1007,D.DG1012,D.DG1016,D.DG1025
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.
1 type=lateral helix=#1 nts=4 GTTG A.DG1001,A.DT1002,A.DT1003,A.DG1004 2 type=lateral helix=#1 nts=4 GTTG A.DG1019,A.DT1020,A.DT1021,A.DG1022 3 type=lateral helix=#2 nts=4 GTTG B.DG1001,B.DT1002,B.DT1003,B.DG1004 4 type=lateral helix=#2 nts=4 GTTG B.DG1019,B.DT1020,B.DT1021,B.DG1022 5 type=lateral helix=#3 nts=4 GTTG C.DG1001,C.DT1002,C.DT1003,C.DG1004 6 type=lateral helix=#3 nts=4 GTTG C.DG1019,C.DT1020,C.DT1021,C.DG1022 7 type=lateral helix=#4 nts=4 GTTG D.DG1001,D.DT1002,D.DT1003,D.DG1004 8 type=lateral helix=#4 nts=4 GTTG D.DG1019,D.DT1020,D.DT1021,D.DG1022