Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.397 type=bowl-2 nts=4 GGGG A.DG1,A.DG15,A.DG10,A.DG6 2 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.442 type=bowl-2 nts=4 GGGG A.DG2,A.DG14,A.DG11,A.DG5 3 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.428 type=bowl-2 nts=4 GGGG B.DG1,B.DG15,B.DG10,B.DG6 4 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.431 type=bowl-2 nts=4 GGGG B.DG2,B.DG14,B.DG11,B.DG5 5 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.403 type=bowl-2 nts=4 GGGG C.DG1,C.DG15,C.DG10,C.DG6 6 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.432 type=bowl-2 nts=4 GGGG C.DG2,C.DG14,C.DG11,C.DG5 7 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.406 type=bowl-2 nts=4 GGGG D.DG1,D.DG15,D.DG10,D.DG6 8 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.420 type=bowl-2 nts=4 GGGG D.DG2,D.DG14,D.DG11,D.DG5 9 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.412 type=bowl-2 nts=4 GGGG E.DG1,E.DG15,E.DG10,E.DG6 10 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.419 type=bowl-2 nts=4 GGGG E.DG2,E.DG14,E.DG11,E.DG5
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.