Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=---- sugar=---- groove=---- planarity=0.102 type=planar nts=4 GGGG A.DG1,A.DG7,B.DG1,B.DG7 2 glyco-bond=---- sugar=---- groove=---- planarity=0.137 type=planar nts=4 GGGG A.DG2,A.DG8,B.DG2,B.DG8 3 glyco-bond=---- sugar=---- groove=---- planarity=0.183 type=bowl-2 nts=4 GGGG A.DG3,A.DG9,B.DG3,B.DG9 4 glyco-bond=---- sugar=---- groove=---- planarity=0.313 type=bowl nts=4 GGGG A.DG4,A.DG10,B.DG4,B.DG10 5 glyco-bond=---- sugar=--.- groove=---- planarity=0.069 type=planar nts=4 GGGG C.DG1,C.DG7,D.DG1,D.DG7 6 glyco-bond=---- sugar=---- groove=---- planarity=0.155 type=planar nts=4 GGGG C.DG2,C.DG8,D.DG2,D.DG8 7 glyco-bond=---- sugar=---- groove=---- planarity=0.126 type=planar nts=4 GGGG C.DG3,C.DG9,D.DG3,D.DG9 8 glyco-bond=---- sugar=---- groove=---- planarity=0.277 type=bowl nts=4 GGGG C.DG4,C.DG10,D.DG4,D.DG10 9 glyco-bond=---- sugar=---- groove=---- planarity=0.053 type=planar nts=4 GGGG E.DG1,E.DG7,F.DG1,F.DG7 10 glyco-bond=---- sugar=---- groove=---- planarity=0.114 type=planar nts=4 GGGG E.DG2,E.DG8,F.DG2,F.DG8 11 glyco-bond=---- sugar=---- groove=---- planarity=0.110 type=planar nts=4 GGGG E.DG3,E.DG9,F.DG3,F.DG9 12 glyco-bond=---- sugar=---- groove=---- planarity=0.277 type=bowl nts=4 GGGG E.DG4,E.DG10,F.DG4,F.DG10
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.