Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=---- sugar=---- groove=---- planarity=0.058 type=planar nts=4 GGGG B.DG1,B.DG7,C.DG1,C.DG7 2 glyco-bond=---- sugar=-.-. groove=---- planarity=0.122 type=planar nts=4 GGGG B.DG2,B.DG8,C.DG2,C.DG8 3 glyco-bond=---- sugar=---- groove=---- planarity=0.097 type=planar nts=4 GGGG B.DG3,B.DG9,C.DG3,C.DG9 4 glyco-bond=---- sugar=---- groove=---- planarity=0.217 type=bowl nts=4 GGGG B.DG4,B.DG10,C.DG4,C.DG10
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.