Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s-s- sugar=---- groove=wnwn planarity=0.350 type=other nts=4 GGGG E.DG1,E.DG15,E.DG10,E.DG6 2 glyco-bond=-s-s sugar=---- groove=wnwn planarity=0.415 type=bowl-2 nts=4 GGGG E.DG2,E.DG14,E.DG11,E.DG5 3 glyco-bond=s-s- sugar=-3-. groove=wnwn planarity=0.175 type=other nts=4 GGGG F.DG1,F.DG15,F.DG10,F.DG6 4 glyco-bond=-s-s sugar=--.- groove=wnwn planarity=0.308 type=bowl-2 nts=4 GGGG F.DG2,F.DG14,F.DG11,F.DG5 5 glyco-bond=s-s- sugar=-3-. groove=wnwn planarity=0.477 type=other nts=4 GGGG G.DG1,G.DG15,G.DG10,G.DG6 6 glyco-bond=-s-s sugar=.--- groove=wnwn planarity=0.463 type=bowl-2 nts=4 GGGG G.DG2,G.DG14,G.DG11,G.DG5 7 glyco-bond=s-s- sugar=-3-- groove=wnwn planarity=0.315 type=saddle nts=4 GGGG I.DG1,I.DG15,I.DG10,I.DG6 8 glyco-bond=-s-s sugar=.-.- groove=wnwn planarity=0.357 type=other nts=4 GGGG I.DG2,I.DG14,I.DG11,I.DG5
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.