Created and maintained by Xiang-Jun Lu <xiangjun@x3dna.org>
Citation: Please cite the NAR'20 DSSR-PyMOL schematics paper and/or the NAR'15 DSSR method paper.
1 glyco-bond=s--s sugar=---- groove=w-n- planarity=0.174 type=other nts=4 GGGG A.DG2,A.DG9,A.DG22,A.DG15 2 glyco-bond=s--s sugar=---- groove=w-n- planarity=0.176 type=other nts=4 gGGG A.BGM3,A.DG8,A.DG21,A.DG16 3 glyco-bond=-ss- sugar=---- groove=w-n- planarity=0.338 type=bowl nts=4 GGGG A.DG4,A.DG7,A.DG20,A.DG17
In DSSR, a G4-helix is defined by stacking interactions of G-tetrads, regardless of backbone connectivity, and may contain more than one G4-stem.
In DSSR, a G4-stem is defined as a G4-helix with backbone connectivity. Bulges are also allowed along each of the four strands.